[1] 金美林, 李桃桃, 孙东晓, 等. 表观遗传调控在畜禽脂肪沉积机制中的研究进展[J]. 畜牧兽医学报, 2023, 54(3):855-867. [2] Dodge J E, Ramsahoye B H, Wo Z G, et al.De novo methylation of MMLV provirus in embryonic stem cells: CpG versus non-CpG methylation[J]. Gene, 2002, 289(1-2):41. [3] Haines T R, Rodenhiser D I, Ainsworth P J.Allele-specific non-CpG methylation of the NF1 gene during early mouse development[J]. Developmental biology, 2001, 240(2):585. [4] Lister R, Pelizzola M, Dowen R H, et al.Human DNA methylomes at base resolution show widespread epigenomic differences[J]. Nature, 2009, 462(7271):315-322. [5] Lister R, Mukamel E A, Nery J R, et al.Global epigenomic reconfiguration during mammalian brain development[J]. Science, 2013, 341(6146):629. [6] Kulis M, Merkel A, Heath S, et al.Whole-genome fingerprint of the DNA methylome during human B cell differentiation[J]. Nature Genetics, 2015, 47(7):746. [7] Rana A K, Ankri S.Reviving the RNA world: An insight into the appearance of RNA methyltransferases[J]. Front Genet, 2016, 7(a003574):99. [8] Jones P A, Liang G.Rethinking how DNA methylation patterns are maintained[J]. Nature Reviews Genetics, 2009, 10(11):805. [9] Bhutani N, Brady J J, Damian M, et al.Reprogramming towards pluripotency requires aid-dependent DNA demethylation[J]. Nature, 2010, 463(7284):1042-1047. [10] Han H, Cortez C C, Yang X, et al.DNA methylation directly silences genes with non-CpG island promoters and establishes a nucleosome occupied promoter[J]. Human Molecular Genetics, 2011, 20(22):4299-4310. [11] Carrel L, Willard H F.X-inactivation profile reveals extensive variability in X-linked gene expression in females[J]. Nature, 2005, 434(7031):400. [12] Rollins R A, Haghighi F, Edwards J R, et al.Large-scale structure of genomic methylation patterns[J]. Genome research, 2006, 16(2):157-163. [13] Suzuki M M, Bird A.DNA methylation landscapes: Provocative insights from epigenomics[J]. Nature Reviews Genetics, 2008, 9(6):465. [14] Igarashi J, Muroi S, Kawashima H, et al.Quantitative analysis of human tissue-specific differences in methylation[J]. Biochemical & Biophysical Research Communications, 2008, 376(4):658-664. [15] Aniruddha Chatterjee I M M. Monozygotic twins: Genes are not the destiny?[J]. Bioinformation, 2011, 7(7):369-370. [16] Chatterjee A, Eccles M R.DNA methylation and epigenomics: New technologies and emerging concepts[J]. Genome Biology, 2015, 16(1):1-5. [17] Chatterjee A.Conference scene: Epigenetic regulation: From mechanism to intervention[J]. Epigenomics, 2015, 4(5):487. [18] Weber M, Davies J J, Wittig D, et al.Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells[J]. Nature Genetics, 2005, 37(8):853-862. [19] Gal-Yam E N, Egger G, Iniguez L, et al. Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line[J]. Proceedings of the National Academy of Sciences, 2008, 105(35):12979. [20] Hashimshony T, Zhang J, Keshet I, et al.The role of DNA methylation in setting up chromatin structure during development[J]. 2003, 34(2):187-192. [21] Lin J C, Jeong S, Liang G, et al.Role of nucleosomal occupancy in the epigenetic silencing of the mlh1 CpG island[J]. Cancer Cell, 2007, 12(5):432. [22] Wade P A, Wolffe A P.Recognizing methylated DNA[J]. Nature Structural Biology, 2001, 8(7):575. [23] Hsieh C L.Dynamics of DNA methylation pattern[J]. Current Opinion in Genetics & Development, 2000, 10(10):224-228. [24] Prendergast G C, Ziff E B.Methylation-sensitive sequence-spe-cific DNA binding by the c-Myc basic region[J]. Science, 1991, 251(4990):186. [25] Harrington M A, Jones P A, Imagawa M, et al.Cytosine methylation does not affect binding of transcription factor Sp1[J]. Proceedings of the National Academy of Sciences of the United States of America, 1988, 85(7):2066-2070. [26] Wolf S F, Jolly D J, Lunnen K D, et al.Methylation of the hypoxanthine phosphoribosyl transferase locus on the human X chromosome: Implications for X-chromosome inactivation[J]. Proceedings of the National Academy of Sciences of the United States of America, 1984, 81(9):2806-2810. [27] Hellman A, Chess A.Gene body-specific methylation on the active X chromosome[J]. Science, 2007, 315(5815):1141. [28] Feng S, Cokus S J, Zhang X, et al.Conservation and divergence of methylation patterning in plants and animals[J]. Proc Natl Acad Sci U S A, 2010, 107(19):8689-8694. [29] Maunakea A K, Nagarajan R P, Bilenky M, et al.Conserved role of intragenic DNA methylation in regulating alternative promoters[J]. Nature, 2010, 466(7303):253. [30] Nguyen C T, Gonzales F A, Jones P A.Altered chromatin structure associated with methylation-induced gene silencing in cancer cells: Correlation of accessibility, methylation, MeCP2 binding and acetylation[J]. Nucleic acids research, 2001, 29(22):4598-4606. [31] Tsan C.High density DNA methylation array with single CpG site resolution[J]. Genomics, 2011, 98(4):288-295. [32] Lee E J, Pei L, Srivastava G, et al.Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing[J]. Nucleic acids research, 2011, 39(19):e127. [33] Su J, Wang Y, Xing X, et al.Genome-wide analysis of DNA methylation in bovine placentas[J]. BMC Genomics, 2014, 15:12. [34] Vanselow J, Yang W, Herrmann J, et al.DNA-remethylation around a STAT5-binding enhancer in the αS1-casein promoter is associated with abrupt shutdown of αS1-casein synthesis during acute mastitis[J]. Journal of molecular endocrinology, 2006, 37(3):463-477. [35] Wang X, Zhang Y, He Y, et al.Aberrant promoter methylation of the CD4 gene in peripheral blood cells of mastitic dairy cows[J]. Genetics and molecular research: GMR, 2013, 12:6228-6239. [36] Nayan V, Singh K, Iquebal M A, et al.Genome-wide DNA methylation and its effect on gene expression during subclinical mastitis in water buffalo[J]. Front Genet, 2022, 13:828292. [37] Fang X, Zhao Z, Yu H, et al.Comparative genome-wide methylation analysis of longissimus dorsi muscles between Japanese black (wagyu) and Chinese red steppes cattle[J]. PLoS One, 2017, 12(8):e0182492. [38] Li M, Tian S, Jin L, et al.Genomic analyses identify distinct patterns of selection in domesticated pigs and Tibetan wild boars[J]. Nature genetics, 2013, 45(12):1431-1438. [39] Corbett R J, Ford L M, Raney N E, et al.Pig fetal skeletal muscle development is associated with genome-wide DNA hypomethylation and corresponding alterations in transcript and microRNA expression[J]. Genome, 2023, 66(4):68-79. [40] Jin L, Jiang Z, Xia Y, et al.Genome-wide DNA methylation changes in skeletal muscle between young and middle-aged pigs[J]. BMC Genomics, 2014, 15(1):653. [41] Li M, Wu H, Luo Z, et al.An atlas of DNA methylomes in porcine adipose and muscle tissues[J]. Nature Communication, 2012, 3:850. [42] 贾文超, 刘亮亮, 吴贤锋, 等. 山羊STAT3基因克隆、生物信息学分析及甲基化修饰研究[J]. 畜牧兽医学报, 2016, 47(3):457-466. [43] Song M.P2016 Combined analysis of DNA methylome and transcriptome reveal novel candidate genes relevant with susceptibility to bovine subclinical mastitis[J]. Journal of animal science, 2016, 94(supplement4):45-45. [44] 韩玉娇. 秦川牛LCORL基因的多态性、mRNA表达及启动子区甲基化研究[D]. 西安:西北农林科技大学, 2016. [45] Huang Y Z, Sun J J, Zhang L Z, et al.Genome-wide DNA methylation profiles and their relationships with mRNA and the microRNA transcriptome in bovine muscle tissue (Bos taurine)[J]. Scientific Reports, 2014, 4:6546. [46] Halušková J, Holečková B, Staničová J.DNA methylation studies in cattle[J]. J Appl Genet, 2021, 62(1):121-136. [47] Zhou Y, Liu S, Hu Y, et al.Comparative whole genome DNA methylation profiling across cattle tissues reveals global and tissue-specific methylation patterns[J]. BMC Biol, 2020, 18(1):85. [48] Ribeiro A M F, Sanglard L P, Wijesena H R, et al. DNA methylation profile in beef cattle is influenced by additive genetics and age[J]. Sci Rep, 2022, 12(1):12016. [49] Capra E, Lazzari B, Milanesi M, et al.Comparison between indicine and taurine cattle DNA methylation reveals epigenetic variation associated to differences in morphological adaptive traits[J]. Epigenetics, 2023, 18(1):2163363. |
No related articles found! |
|